Index

A

A (pyjac.core.chem_utilities.ReacInfo attribute) act_energy_fact (in module pyjac.core.mech_interpret) act_energy_units (in module pyjac.core.mech_interpret)

add_to_dictionary() (pyjac.core.shared_memory.shared_memory_manager method) array_chars (in module pyjac.utils) AutodiffJacob (class in pyjac.functional_tester.test)

B

b (pyjac.core.chem_utilities.ReacInfo attribute)

C

calc_spec_smh() (in module pyjac.core.chem_utilities) calculate_shared_memory() (in module pyjac.core.create_jacobian) check_file() (in module pyjac.performance_tester.performance_tester) check_numbers() (pyjac.functional_tester.test.cpyjac_evaluator method) check_optimized() (pyjac.functional_tester.test.cpyjac_evaluator method) check_step_file() (in module pyjac.performance_tester.performance_tester) clean() (pyjac.functional_tester.test.cpyjac_evaluator method) (pyjac.functional_tester.test.cupyjac_evaluator method) cmd_lib() (in module pyjac.libgen.libgen)

cmd_link() (in module pyjac.performance_tester.performance_tester) comment (in module pyjac.utils) compiler() (in module pyjac.libgen.libgen) convert_mech() (in module pyjac.functional_tester.test) cpyjac_evaluator (class in pyjac.functional_tester.test) create_dir() (in module pyjac.utils) create_jacobian() (in module pyjac.core.create_jacobian) cupyjac_evaluator (class in pyjac.functional_tester.test) czeros() (pyjac.functional_tester.test.cupyjac_evaluator method)

D

distutils_dir_name() (in module pyjac.pywrap.pywrap_gen) dup (pyjac.core.chem_utilities.ReacInfo attribute)

dydt() (pyjac.functional_tester.test.cpyjac_evaluator method) (pyjac.functional_tester.test.cupyjac_evaluator method)

E

E (pyjac.core.chem_utilities.ReacInfo attribute) elem (pyjac.core.chem_utilities.SpecInfo attribute) equivalence_ratio() (in module pyjac.functional_tester.partially_stirred_reactor) eval_conc() (pyjac.functional_tester.test.cpyjac_evaluator method) (pyjac.functional_tester.test.cupyjac_evaluator method) eval_jacobian() (pyjac.functional_tester.test.AutodiffJacob method) (pyjac.functional_tester.test.cpyjac_evaluator method) (pyjac.functional_tester.test.cupyjac_evaluator method)

eval_rxn_rates() (pyjac.functional_tester.test.cpyjac_evaluator method) (pyjac.functional_tester.test.cupyjac_evaluator method) eval_spec_rates() (pyjac.functional_tester.test.cpyjac_evaluator method) (pyjac.functional_tester.test.cupyjac_evaluator method) evict() (pyjac.core.shared_memory.shared_memory_manager method) evict_longest_gap() (pyjac.core.shared_memory.shared_memory_manager method) exp_10_fun (in module pyjac.utils)

F

file_ext (in module pyjac.utils)

file_struct (class in pyjac.libgen.libgen) force_eviction() (pyjac.core.shared_memory.shared_memory_manager method)

G

generate_library() (in module pyjac.libgen.libgen) generate_setup() (in module pyjac.pywrap.pywrap_gen) generate_wrapper() (in module pyjac.pywrap.pywrap_gen) get_array() (in module pyjac.utils) (pyjac.core.shared_memory.shared_memory_manager method) get_cheb_rate() (in module pyjac.core.rate_subs) get_conc() (pyjac.functional_tester.test.tchem_evaluator method) get_cuda_path() (in module pyjac.libgen.libgen) get_db_dt() (in module pyjac.core.create_jacobian) get_dydt() (pyjac.functional_tester.test.tchem_evaluator method) get_elem_wt() (in module pyjac.core.chem_utilities) get_elementary_rxn_dt() (in module pyjac.core.create_jacobian) get_file_list() (in module pyjac.libgen.libgen) get_index() (in module pyjac.utils) (pyjac.core.shared_memory.shared_memory_manager method)

get_infs() (in module pyjac.core.create_jacobian) get_jacobian() (pyjac.functional_tester.test.tchem_evaluator method) get_L1_size() (in module pyjac.core.CUDAParams) get_nu() (in module pyjac.utils) get_parser() (in module pyjac.utils) get_pdep_dt() (in module pyjac.core.create_jacobian) get_register_count() (in module pyjac.core.CUDAParams) get_rxn_params_dt() (in module pyjac.core.create_jacobian) get_rxn_pres_mod() (pyjac.functional_tester.test.cpyjac_evaluator method) (pyjac.functional_tester.test.cupyjac_evaluator method) get_rxn_rates() (pyjac.functional_tester.test.tchem_evaluator method) get_shared_size() (in module pyjac.core.CUDAParams) get_spec_rates() (pyjac.functional_tester.test.tchem_evaluator method) get_species_mappings() (in module pyjac.utils) getf() (in module pyjac.performance_tester.performance_tester)

H

header_ext (in module pyjac.utils)

hi (pyjac.core.chem_utilities.SpecInfo attribute) high (pyjac.core.chem_utilities.ReacInfo attribute)

I

inflow() (in module pyjac.functional_tester.partially_stirred_reactor) is_integer() (in module pyjac.utils)

is_pdep() (in module pyjac.functional_tester.test) (in module pyjac.performance_tester.performance_tester)

L

langs (in module pyjac.utils) lib_ext() (in module pyjac.libgen.libgen) libgen() (in module pyjac.libgen.libgen) line_end (in module pyjac.utils)

linker() (in module pyjac.performance_tester.performance_tester) lo (pyjac.core.chem_utilities.SpecInfo attribute) load_into_shared() (pyjac.core.shared_memory.shared_memory_manager method) low (pyjac.core.chem_utilities.ReacInfo attribute)

M

mark_for_eviction() (pyjac.core.shared_memory.shared_memory_manager method)

mix_substep() (in module pyjac.functional_tester.partially_stirred_reactor) mw (pyjac.core.chem_utilities.SpecInfo attribute)

N

name (pyjac.core.chem_utilities.SpecInfo attribute)

None (in module pyjac.core.chem_utilities)

O

optimize_cache() (in module pyjac.core.cache_optimizer)

optimizer_loop() (in module pyjac.core.cache_optimizer)

P

pairwise() (in module pyjac.functional_tester.partially_stirred_reactor) parallel_compile() (in module pyjac.pywrap.parallel_compiler) parse_input_file() (in module pyjac.functional_tester.partially_stirred_reactor) Particle (class in pyjac.functional_tester.partially_stirred_reactor) particle_mass (pyjac.functional_tester.partially_stirred_reactor.Particle attribute) pdep (pyjac.core.chem_utilities.ReacInfo attribute) pdep_sp (pyjac.core.chem_utilities.ReacInfo attribute) performance_tester() (in module pyjac.performance_tester.performance_tester) plot() (in module pyjac.core.cache_optimizer) pre_units (in module pyjac.core.mech_interpret) prod_nu (pyjac.core.chem_utilities.ReacInfo attribute) products (pyjac.core.chem_utilities.ReacInfo attribute) pyjac (module) pyjac.core (module) pyjac.core.cache_optimizer (module) pyjac.core.chem_utilities (module) pyjac.core.CParams (module)

pyjac.core.create_jacobian (module) pyjac.core.CUDAParams (module) pyjac.core.mech_auxiliary (module) pyjac.core.mech_interpret (module) pyjac.core.rate_subs (module) pyjac.core.shared_memory (module) pyjac.functional_tester (module) pyjac.functional_tester.partially_stirred_reactor (module) pyjac.functional_tester.test (module) pyjac.libgen (module) pyjac.libgen.libgen (module) pyjac.performance_tester (module) pyjac.performance_tester.performance_tester (module) pyjac.pywrap (module) pyjac.pywrap.parallel_compiler (module) pyjac.pywrap.pywrap_gen (module) pyjac.utils (module)

R

reac_nu (pyjac.core.chem_utilities.ReacInfo attribute) ReacInfo (class in pyjac.core.chem_utilities) react() (pyjac.functional_tester.partially_stirred_reactor.Particle method) reactants (pyjac.core.chem_utilities.ReacInfo attribute) reaction_substep() (in module pyjac.functional_tester.partially_stirred_reactor) reaction_worker() (in module pyjac.functional_tester.partially_stirred_reactor) ReactorConstPres (class in pyjac.functional_tester.test) ReactorConstVol (class in pyjac.functional_tester.test) read_mech() (in module pyjac.core.mech_interpret) read_mech_ct() (in module pyjac.core.mech_interpret) read_str_num() (in module pyjac.utils)

read_thermo() (in module pyjac.core.mech_interpret) reassign_species_lists() (in module pyjac.utils) reset() (pyjac.core.shared_memory.shared_memory_manager method) (pyjac.core.shared_memory.variable method) reshaper() (pyjac.functional_tester.test.cupyjac_evaluator method) restrict (in module pyjac.utils) rev (pyjac.core.chem_utilities.ReacInfo attribute) rev_par (pyjac.core.chem_utilities.ReacInfo attribute) run_pasr() (in module pyjac.functional_tester.test) run_simulation() (in module pyjac.functional_tester.partially_stirred_reactor) rxn_rate_const() (in module pyjac.core.rate_subs)

S

safe_remove() (in module pyjac.functional_tester.test) save_data() (in module pyjac.functional_tester.partially_stirred_reactor) select_pairs() (in module pyjac.functional_tester.partially_stirred_reactor) set_on_eviction() (pyjac.core.shared_memory.shared_memory_manager method) shared_memory_manager (class in pyjac.core.shared_memory)

SpecInfo (class in pyjac.core.chem_utilities) split_str() (in module pyjac.utils) sri (pyjac.core.chem_utilities.ReacInfo attribute) sri_par (pyjac.core.chem_utilities.ReacInfo attribute) STATIC (in module pyjac.performance_tester.performance_tester) Stream (class in pyjac.functional_tester.partially_stirred_reactor)

T

tchem_evaluator (class in pyjac.functional_tester.test) test() (in module pyjac.functional_tester.test) thd (pyjac.core.chem_utilities.ReacInfo attribute) thd_body (pyjac.core.chem_utilities.ReacInfo attribute)

to_string() (pyjac.core.shared_memory.variable method) Trange (pyjac.core.chem_utilities.SpecInfo attribute) troe (pyjac.core.chem_utilities.ReacInfo attribute) troe_par (pyjac.core.chem_utilities.ReacInfo attribute)

U

update() (pyjac.core.shared_memory.variable method) (pyjac.functional_tester.test.cpyjac_evaluator method) (pyjac.functional_tester.test.cupyjac_evaluator method)

V

variable (class in pyjac.core.shared_memory)

W

which() (in module pyjac.libgen.libgen) write_cheb_rxn_dt() (in module pyjac.core.create_jacobian) write_cheb_ut() (in module pyjac.core.create_jacobian) write_chem_utils() (in module pyjac.core.rate_subs) write_db_dt_def() (in module pyjac.core.create_jacobian) write_dcp_dt() (in module pyjac.core.create_jacobian) write_derivs() (in module pyjac.core.rate_subs) write_dr_dy() (in module pyjac.core.create_jacobian) write_dr_dy_species() (in module pyjac.core.create_jacobian) write_dt_comment() (in module pyjac.core.create_jacobian) write_dt_completion() (in module pyjac.core.create_jacobian) write_dy_comment() (in module pyjac.core.create_jacobian) write_dy_intros() (in module pyjac.core.create_jacobian) write_dy_y_finish_comment() (in module pyjac.core.create_jacobian) write_header() (in module pyjac.core.mech_auxiliary) write_init() (pyjac.core.shared_memory.shared_memory_manager method)

write_jacobian() (in module pyjac.core.create_jacobian) write_kc() (in module pyjac.core.create_jacobian) write_launch_bounds() (in module pyjac.core.CUDAParams) write_mass_mole() (in module pyjac.core.rate_subs) write_mechanism_initializers() (in module pyjac.core.mech_auxiliary) write_plog_rxn_dt() (in module pyjac.core.create_jacobian) write_pr() (in module pyjac.core.create_jacobian) write_rates() (in module pyjac.core.create_jacobian) write_rxn_pressure_mod() (in module pyjac.core.rate_subs) write_rxn_rates() (in module pyjac.core.rate_subs) write_sparse_multiplier() (in module pyjac.core.create_jacobian) write_spec_rates() (in module pyjac.core.rate_subs) write_sri() (in module pyjac.core.create_jacobian) write_sri_dt() (in module pyjac.core.create_jacobian) write_sub_intro() (in module pyjac.core.create_jacobian) write_troe() (in module pyjac.core.create_jacobian) write_troe_dt() (in module pyjac.core.create_jacobian)