| ▼ cvodes | |
| cvodes_dydt.c | CVODEs Wrapper for the RHS function |
| cvodes_dydt.h | Header file for CVODEs interface to RHS of ODEs |
| cvodes_init.c | Implementation of the necessary initialization for the CVODE interface |
| cvodes_jac.c | A simple wrapper, allowing for use of the analytical jacobian w/ CVODES |
| cvodes_jac.h | A simple wrapper, allowing for use of the analytical jacobian w/ CVODES |
| solver_cvodes.c | The integration driver for the CVODE solver |
| ▼ examples | |
| ▶ pyJac | |
| plotter.py | |
| ▶ van_der_pol | |
| dydt.c | An implementation of the van der Pol right hand side (y' = f(y)) function |
| dydt.cu | A CUDA implementation of the van der Pol right hand side (y' = f(y)) function |
| dydt.cuh | Contains header definitions for the CUDA RHS function for the van der Pol example |
| dydt.h | Contains header definitions for the RHS function for the van der Pol example |
| generate_ics.py | Generates initial conditions file for van der Pol problem |
| gpu_macros.cuh | Defines some simple macros to simplify GPU indexing |
| gpu_memory.cu | Initializes and calculates required GPU memory |
| gpu_memory.cuh | Headers for GPU memory initialization |
| header.cuh | An example header file that defines system size, memory functions and other required methods for integration of the van der Pol's equation with the CUDA solvers |
| header.h | An example header file that defines system size and other required methods for integration of the van der Pol's equation |
| ics.c | Sets same Initial Conditions (ICs) for all problems |
| ics.cu | Sets same Initial Conditions (ICs) for all problems |
| jacob.c | An implementation of the van der Pol jacobian \(\frac{\partial \dot{\vec{y}}}{\partial \vec{y}}\) |
| jacob.cu | A CUDA implementation of the van der Pol jacobian \(\frac{\partial \dot{\vec{y}}}{\partial \vec{y}}\) |
| jacob.cuh | Contains a header definition for the CUDA van der Pol Jacobian evaluation |
| jacob.h | Contains a header definition for the van der Pol Jacobian evaluation |
| launch_bounds.cuh | A number of definitions that control CUDA kernel launches |
| plotter.py | |
| sparse_multiplier.c | Implementation for Jacobian vector multiplication, used in exponential integrators |
| sparse_multiplier.cu | Implementation for CUDA Jacobian vector multiplication, used in exponential integrators |
| sparse_multiplier.cuh | Header definition for CUDA Jacobian vector multiplier, used in exponential integrators |
| sparse_multiplier.h | Header definition for Jacobian vector multiplier, used in exponential integrators |
| ▼ exponential_integrators | |
| ▶ exp4 | |
| exp4.c | A krylov subspace integrator using the fourth-order (3rd order embedded) Rosenbrock-like solver of Hochbruck et al. (1998) |
| exp4.cu | A krylov subspace integrator using the fourth-order (3rd order embedded) Rosenbrock-like solver of Hochbruck et al. (1998) |
| exp4_init.c | Implementation of the necessary initialization for the EXP4 method |
| exp4_init.cu | Implementation of the necessary initialization for the EXP4 method |
| exp4_props.c | Contains error checking for EXP4 return codes |
| exp4_props.cu | Error checking for the EXP4 algorithm |
| exp4_props.cuh | Various macros controlling behaviour of EXP4 algorithm |
| exp4_props.h | Various macros controlling behaviour of EXP4 algorithm |
| ▶ exprb43 | |
| exprb43.c | A krylov subspace integrator using a 4th order (3rd-order embedded) exponential Rosenbrock method of Hochbruck et al. (2009) |
| exprb43.cu | A krylov subspace integrator using a 4th order (3rd-order embedded) exponential Rosenbrock method of Hochbruck et al. (2009) |
| exprb43_init.c | Implementation of the necessary initialization for the 4th order (3rd order embedded) Rosenbrock Solver |
| exprb43_init.cu | Implementation of the necessary initialization for the 4th order (3rd order embedded) Rosenbrock Solver |
| exprb43_props.c | Contains error checking for EXPRB43 return codes |
| exprb43_props.cu | Error checking for the EXPRB43 algorithm |
| exprb43_props.cuh | Various macros controlling behaviour of RB43 algorithm |
| exprb43_props.h | Various macros controlling behaviour of EXPRB43 algorithm |
| arnoldi.cuh | Implementation of the GPU arnoldi iteration methods |
| arnoldi.h | Implementation of the arnoldi iteration methods |
| cf.c | File containing functions for best rational approximation to matrix exponential |
| cf.h | Header definition for rational approximation to matrix exponential |
| exponential_linear_algebra.cu | Implementation of various linear algebra functions needed in the exponential integrators |
| exponential_linear_algebra.cuh | Definitions of various linear algebra functions needed in the exponential integrators |
| exponential_linear_algebra.h | Implementation of various linear algebra functions needed in the exponential integrators |
| linear-algebra.c | Various linear algebra routines needed for the Carathéodory-Fejér method |
| linear-algebra.h | Header definitions of linear algebra routines needed for the Carathéodory-Fejér method |
| phiAHessenberg.c | Computes various matrix exponential functions on the Krylov Hessenberg matricies |
| phiAHessenberg.cu | Computes various matrix exponential functions on the Krylov Hessenberg matricies |
| phiAHessenberg.cuh | Header for Matrix exponential (phi) methods |
| phiAHessenberg.h | Header for Matrix exponential (phi) methods |
| rational_approximant.c | The generic initialization file for poles/hosts for RA based evaulation of the matrix exponential |
| rational_approximant.cu | The generic initialization file for poles/hosts for RA based evaulation of the matrix exponential |
| rational_approximant.cuh | The generic initialization file for poles/hosts for RA based evaulation of the matrix exponential |
| rational_approximant.h | The generic initialization file for poles/hosts for RA based evaulation of the matrix exponential |
| ▼ generic | |
| complexInverse.c | Implementation of LU factorization of complex (variable-sized) matricies |
| complexInverse.cu | Implementation of LU factorization of complex (variable-sized) matricies for CUDA |
| complexInverse.cuh | Header definitions for CUDA LU factorization routines |
| complexInverse.h | Header definitions for LU factorization routines |
| fd_jacob.c | Finite Difference Jacobian implementation based on CVODEs |
| fd_jacob.cu | Finite Difference Jacobian implementation based on CVODEs |
| fd_jacob.cuh | Header definition of CUDA Finite Difference Jacobian |
| inverse.cu | CUDA LU decomposition implementation |
| inverse.cuh | Headers for CUDA LU decomposition implementation |
| lapack_dfns.h | External lapack routine definitions |
| read_initial_conditions.c | Generic initial condition reader |
| read_initial_conditions.cu | Generic CUDA initial condition reader |
| read_initial_conditions.cuh | Definition of the generic initial condition reader |
| read_initial_conditions.h | Definition of the generic initial condition reader |
| solver.cuh | Generic main file for all GPU solvers |
| solver.h | Contains skeleton of all methods that need to be defined on a per solver basis |
| solver_generic.c | Generic integration driver for the CPU solvers |
| solver_generic.cu | Generic integration driver for the GPU solvers |
| solver_init.cuh | Header definitions for solver initialization routins |
| solver_init.h | Header definitions for solver initialization routins |
| solver_interface.c | Interface implementation for CPU solvers to be called as a library |
| solver_interface.cu | Interface implementation for GPU solvers to be called as a library |
| solver_interface.cuh | Interface implementation for GPU solvers to be called as a library |
| solver_interface.h | Interface implementation for CPU solvers to be called as a library |
| solver_main.c | Generic main file for all CPU solvers |
| solver_main.cu | Generic main file for all GPU solvers |
| solver_options.cuh | A file generated by Scons that specifies various options to the solvers |
| solver_options.h | A file generated by Scons that specifies various options to the solvers |
| solver_props.cuh | Simple convenience file to include the correct solver properties file |
| solver_props.h | Simple convenience file to include the correct solver properties file |
| timer.h | Timer interface for Linux |
| ▼ radau2a | |
| radau2a.c | A Radau2A IRK implementation for C Adapted from Hairer and Wanner's RADAU5 code and the FATODE ODE integration library |
| radau2a.cu | A Radau2A IRK implementation for CUDA Adapted from Hairer and Wanner's RADAU5 code and the FATODE ODE integration library |
| radau2a_init.c | Implementation of the necessary initialization for the RadauII-A solver |
| radau2a_init.cu | Implementation of the necessary initialization for the Radau-IIA solver |
| radau2a_props.c | Error checking for the CPU Radua-IIa solver |
| radau2a_props.cu | Error checking for the CPU Radua-IIa solver |
| radau2a_props.cuh | Various macros controlling behaviour of RADAU2A algorithm |
| radau2a_props.h | Various macros controlling behaviour of RADAU2A algorithm |
| ▼ rk78 | |
| rk78_init.cpp | Implementation of the necessary initialization for Boost's RK78-Felhberg solver |
| rk78_typedefs.hpp | Defines an interface for boost's runge_kutta_fehlberg78 solver |
| solver_rk78.cpp | Defines an interface for boost's runge_kutta_fehlberg78 solver |
| ▼ rkc | |
| rkc.c | Defines interface for Runge-Kutta-Chebyshev (RKC) solver |
| rkc.cu | |
| rkc.cuh | |
| rkc.h | |
| rkc_init.c | Implementation of the necessary initialization for the RKC solver |
| rkc_init.cu | Implementation of the necessary initialization for the RKC GPU solver |
| rkc_props.c | Error checking for the CPU RKC solver |
| rkc_props.cu | Error checking for the GPU RKC solver |
| rkc_props.cuh | Various macros controlling behaviour of RKC algorithm |
| rkc_props.h | |
